Papers

2023

I. Sidelnik et al. The capability of water Cherenkov detectors arrays of the LAGO project to detect Gamma-Ray Burst and high energy astrophysics sources. Nuclear Inst. and Methods in Physics Research, A 1056, 168576 (2023)
T. Torres-Peralta et al. Particle classification in the LAGO water Cherenkov detectors using clustering algorithms. Nuclear Inst. and Methods in Physics Research, A 1055, 168557 (2023)
A. Bustos et al. Response of HPC hardware to neutron radiation at the dawn of exascale. The Journal of Supercomputing 79, 13817–13838 (2023)
H. Asorey, R. Mayo-García. Calculation of the high-energy neutron flux for anticipating errors and recovery techniques in exascale supercomputer centres. The Journal of Supercomputing 79, 8205–8235 (2023)
H. Asorey, M. Suárez-Durán, R. Mayo-García, ACORDE: A new application for estimating the dose absorbed by passengers and crews in commercial flights. Applied Radiation and Isotopes 196, 110752 (2023)
J.A. Moríñigo, P. Anaya-Ruiz, A. Bustos, R. Mayo-García. Unsteady RANS-based DMD analysis of airfoil NACA0015 with Gurney flap. International Journal of Heat and Fluid Flow 99, 109099 (2023)
R. Isea, R. Mayo-García. A Data Mining Methodology for Detecting Conspiracy Theories from Scientific Articles: The Covid-19 Case. International Journal of Coronaviruses 4, 22-31 (2023)
A. Calatrava et al. A survey of the European Open Science Cloud services for expanding the capacity and capabilities of multidisciplinary scientific applications. Computer Science Review 49, 100571 (2023)

2022

J.A. Moríñigo, A. Bustos, R. Mayo-García. Error resilience of three GMRES implementations under fault injection. The Journal of Supercomputing 78, 7158–7185 (2022)
I. Ojeda-Pérez et al. Analyzing gene editing enhancers and hematopoietic stem and Progenitor cell clonality using DNA barcoding for the treatment of Pyruvate Kinase Deficiency. Human Gene Therapy 33, A63-A64 (2022)
I. Ojeda-Pérez et al. DNA Barcode as a Useful Tool to Study Hematopoietic Stem Cell Fate in Gene Editing Strategies. Molecular Therapy 30, 6-7 (2022)
R. Mayo-García, E. Audit. Exascale, a great opportunity for Clean Energy Transition in Europe. Joint EERA and EoCoE position paper on HPC for Energy.
A. Bustos et al. Energy Consumption Studies of WRF Executions with the LIMITLESS Monitor. In: Gitler, I., Barrios Hernández, C.J., Meneses, E. (eds) High Performance Computing. CARLA 2021. Communications in Computer and Information Science 1540, 19-33 (2022)
P. Sica et al. Protocol to study the oligomeric organization of single-span transmembrane peptides using molecular dynamics simulations. STAR Protoc. 19 (3), 101636 (2022)
R. Isea, R. Mayo-García. Analysis of Covid-19 Using A Modified SEIR Model To Understand The Cases Registered in Singapore, Spain, And Venezuela. Journal of Model Based Research 1 (4), 13 (2022)
R. Isea, R.Mayo-García. First Analytical Solution of Intracellular life Cycle of SARS-CoV-2. Journal of Model Based Research 1 (4), 6 (2022)

2021

A. J. Rubio-Montero, R. Pagán-Muñoz, R. Mayo-García, A. Pardo-Diaz, I. Sidelnik, H. Asorey, A Novel Cloud-Based Framework For Standardized Simulations In The Latin American Giant Observatory (LAGO). 2021 Winter Simulation Conference (WSC), 1-12 (2021)
A. Bustos, E. Ascasíbar, A. Cappa, R. Mayo-García. Automatic identification of MHD modes in magnetic fluctuation spectrograms using deep learning techniques. Plasma Phys. Control. Fusion 63, 095001 (2021)
A. Wierling et al. FAIR Metadata Standards for Low Carbon Energy Research—A Review of Practices and How to Advance. Energies 14, 6692 (2021)
A. Pecchia et al., Non-Equilibrium Green Functions Approach to Study Transport Through a-Si:H/c-Si Interfaces. 2021 Winter Simulation Conference (WSC), 1-10 (2021)
A.J. Rubio-Montero, R. Pagán-Muñoz, R. Mayo-García, A. Pardo-Diaz, I. Sidelnik, H. Asorey. The EOSC-Synergy cloud services implementation for the Latin American Giant Observatory (LAGO). PoS 395, 261 (2021)
J..J. García-Aranda, J. Ramos-Díaz, S. Molina-Cardín, X. Larriva-Novo, A. Bustos, L.A. Galindo, R. Mayo-García. Dynamically Distributing Tasks from an Unattended Parallel Compiler with Cloudbook. Communications in Computer and Information Science 1327, 3–17 (2021)

2020

F. Buonocore, S. Giusepponi, M. Celino, P.L. Garcia-Muller, R. Mayo-Garcia. A Combined Classical Molecular Dynamics Simulations and AB Initio Calculations Approach to Study A-SI:H/C-SI Interfaces. 2020 Winter Simulation Conference (WSC), Orlando, FL, USA, 3117-3127 (2020)
J. Moríñigo, P. García-Muller, A.J. Rubio-Montero, A. Gómez-Iglesias, N. Meyer, R. Mayo-García. Performance drop at executing communication-intensive parallel algorithms. The Journal of Supercomputing 76, 6834-6859 (2020)
M. Rodríguez-Pascual, A.J. Rubio-Montero, J.A. Moríñigo, R. Mayo-García. Execution data logs of a supercomputer workload over its extended lifetime. Data in brief 28 (2020) 105006
A.J. Rubio-Montero et al. Evolution of the maintainability of HPC facilities at CIEMAT headquarters. Revista UIS Ingenierías 19 (2), 85-88 (2020)
R. Isea, R. Mayo-García. Dynamics of Infections and Number of Vaccines Needed to Avoid Covid-19 in Europe. International Journal of Coronaviruses 2 (1), 14 (2020)

2019

M. Rodríguez-Pascual, J.A. Moríñigo, R. Mayo-García. Effect of MPI tasks location on cluster throughput using NAS. Cluster Computing 22, 1187–1198 (2019)
M. Rodríguez-Pascual, J. Cao, J.A. Moríñigo, G. Cooperman, R. Mayo-García. Job migration in HPC clusters by means of checkpoint/restart. The Journal of Supercomputing 75, 6517-6541 (2019)
J.A. Moríñigo, P. García-Müller, A.J. Rubio-Montero, A. Gómez-Iglesias, N. Meyer, R. Mayo-García. Benchmarking LAMMPS: Sensitivity to Task Location Under CPU-Based Weak-Scaling. Communications in Computer and Information Science 979, 224-238 (2019)
J.A. Moríñigo, M. Rodríguez-Pascual, R. Mayo-García. On the modelling of optimal coordinated checkpoint period in supercomputers. The Journal of Supercomputing 75, 930-954 (2019)
N. Molero-Puerto, R. Mayo-García. Using GPUs for determining the energy configuration of superconducting vortex lattices with stochastic methods. In: Proc. 2019 Winter Simulation Conf, 3277 - 3284

2018

E. Mocskos, C.J. Barrios, H. Castro, D. Cazar, S. Nesmachnow, R. Mayo-García. Boosting Advanced Computational Applications and Resources in Latin America through Collaboration and Sharing. Computing in Science & Engineering 20 3, 39-48 (2018)
M. Rodríguez-Pascual, José A. Moríñigo, R. Mayo-García. Benchmarking Performance: Influence of Task Location on Cluster Throughput. Communications in Computer and Information Science 796, 125–138 (2018)
M. Rodríguez-Pascual, José A. Moríñigo, R. Mayo-García. Energy Determination of Superconducting Vortex Lattices with Stochastic Methods Calculated on GPUs. In: ENERGY 2018 8, 82-88 (2018)
Antonio J. Rubio-Montero, Pablo Colino-Sanguino, Emmanuell Díaz Carreño, Gilberto Díaz, Daniel Ortiz, David A. Vinazza, Rafael Mayo-Carcía. La infraestructura de RICAP en la nube para realizar e-Ciencia en Latinoamérica. Actas del 2º Encuentro Latinoamericano e e-Ciencia, 131-140 (2018)

2017

A.J. Rubio-Montero, E. Huedo, R. Mayo-García. Scheduling multiple virtual environments in cloud federations for distributed calculations. Future Generation Computer Systems 74, 90-103 (2017).
A.J. Rubio-Montero, M. Rodríguez-Pascual, R. Mayo-García. A simple model to exploit reliable algorithms in cloud federations. Soft Computing 21, 4543-4555 (2017)
I. Sidelnik et al. LAGO: The Latin American giant observatory. Nuclear Instruments and Methods in Physics Research A 876, 173–175 (2017)
A. Galindo et al. Calibration of a large water-Cherenkov detector at the Sierra Negra site of LAGO. Nuclear Instruments and Methods in Physics Research A 861, 28–37 (2017)
R. Mayo-García et al. Enhancing Energy Production with Exascale HPC Methods. In: Barrios Hernández C., Gitler I., Klapp J. (eds) High Performance Computing. CARLA 2016. Communications in Computer and Information Science, vol 697. 233-246 (2017). Springer

2016

F. Revuelta, Thomas Bartsch, P. L. Garcia-Muller, Rigoberto Hernandez, R. M. Benito, and F. Borondo. Transition state theory for solvated reactions beyond recrossing-free dividing surfaces. Phys. Rev. E 93, 062304 (2016)
F. Castejón, A.J. Rubio-Montero, A. López-Fraguas, E. Ascasíbar, R. Mayo-García. "Neoclassical Transport and Iota Scaling in the TJ-II Stellerator". Nuclear Science and Technology 70, 406 - 416 (2016)
M. Rodríguez-Pascual; C. Kanellopoulos; A.J. Rubio-Montero; D. Darriba; O.Prnjat, D. Posada; R. Mayo-García. "Adapting Reproducible Research Capabilities to Resilient Distributed Calculations". International Journal of Grid and High Performance Computing 8, 58 - 69.(2016)
M. Sofo Haro et al. "The data acquisition system of the Latin American Giant Observatory (LAGO)". Nuclear Instruments and Methods in Physics Research A 820, 34–39 (2016)
J.M Cela; A.L.G.A. Coutinho; P.O.A. Navaux; R. Mayo-García. "Fostering Collaboration in Energy Research and Technological Developments applying new exascale HPC techniques" 16^th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing,.701 - 706 (2016)
H. Asorey; L.A. Núñez; M. Suárez-Durán; L.A. Torres-Niño; M. Rodríguez-Pascual; A.J. Rubio-Montero, R. Mayo-García. "The Latin American Giant Observatory: a successful collaboration in Latin America based on Cosmic Rays and computer science domains". 16^th IEEE/ACM International Symposium on Cluster, Cloud, and Grid Computing,.707 - 711 (2016)

2015

A.J. Rubio-Montero, E. Huedo, R. Mayo-García. "User-Guided Provisioning in Federated Clouds for Distributed Calculations". LNCS 9438, 60-77 (2015)
M. Rodriguez-Pascual, G. LaRocca, C. Kanellopoulo, C. Carrubba, G. Inserra, R. Ricceri, H. Asorey, A.J. Rubio-Montero, E. Núñez-González, L.A. Núñez, O. Prnjat, R. Barbera, R. Mayo-García. "A Resilient Methodology for Accessing and Exploiting Data and Scientific Codes on Distributed Environments" Procs. 18th IEEE International Conference on Computational Science and Engineering (CSE-2015) 319-323 (2015)
M. Botón-Fernández, M. Rodríguez-Pascual, M.A. Vega-Rodríguez, F. Prieto-Castrillo, R. Mayo-García. "A Comparative Analysis of Adaptive Solutions for Grid Environments". Int. J. Parallel Programming 43, 786-811 (2015)
A.J. Rubio-Montero, E. Huedo, F. Castejón, R. Mayo-García. "A novel pilot job approach for improving the execution of distributed codes: application to the study of ordering in collisional transport in fusion plasmas". Concurrency Computat.: Pract. Exper. 27, 3220-3244 (2015)
A.J. Rubio-Montero, E. Huedo, F. Castejón, R. Mayo-García. "GWpilot: Enabling multi-level scheduling in distributed infrastructures with GridWay and pilot jobs". Future Generation Computer Systems 45, 25-52 (2015).
A.J. Rubio-Montero; Manuel Rodríguez-Pascual; Rafael Mayo-García. "Evaluation of an adaptive framework for resilient Monte Carlo executions". Proceedings of the 30th ACM/SIGAPP Symposium On Applied Computing. 30, pp. 448 - 455. ACM, 2015.
M. Rodríguez-Pascual; A.J. Rubio-Montero, R. Mayo-García, C. Kanellopoulos, O. Prjnat, D. Darriba, D. Posada. "A fault tolerant workflow for reproducible research". Procs. 2014 Annual Global Online Conf on Information and Computer Technology. pp. 70 - 75. IEEE Comp. Soc., 2015.

2013

M. Rodríguez-Pascual, R. Mayo-García. "An unattended and fault-tolerant approach for the execution of distributed applications". Iberian Grid Infrastructure Conference Proceedings 7, 189-202 (2013)
M. Rodríguez-Pascual, I.M. Llorente, R. Mayo-García. "Montera: a framework for efficient execution of Monte Carlo codes on Grid infrastructures". Computing and Informatics 32, 113-144 (2013)
M. Rodríguez Pascual, A. Bustos, F. Castejón, I. Martín Llorente, M. Tereshchenko, R. Mayo-García. "Simulations of fast ions distributions in stellerators based on coupled Monte Carlo fuelling and orbit codes". Plasma Phys. Control. Fusion 55, 085014 (2013)
M Ortiz, C Aragón, J A Aguilera, J Rodríguez-García and R Mayo-García. "Experimental transition probabilities for spectral lines of Re II" J. Physics B 46, 185702 (2013)

2012

A.J. Rubio-Montero, F. Castejón, E. Huedo, M. Rodríguez-Pascual, R. Mayo-García. "Performance improvements for the neoclassical transport calculation on Grid by means of pilot jobs". IEEE Proc. 2012 International Conference on High Performance Computing & Simulations, 609-615 (2012).
M.A. Rodríguez-Pascual, A. Gómez, R. Myo-García, D. Pérez de Lara, E.M. González, A.J. Rubio-Montero, J.L. Vicent. "Superconducting Vortex Lattice Configurations on Periodic Potentials: Simulation and Experiment". J. Supercond. Nov. Magn. 25, 2127-2130 (2012)

2011

M. Rodríguez-Pascual, D. Darriba, G.L. Taboada, R. Doallo, D. Posada, R. Mayo. "Grid selection of best-fit models of protein evolution". Proc. HealthGrid 2011 Conference, H5 (2011)

2010

M.A. Rodríguez-Pascual, A. Bustos, A.J. Rubio-Montero, F. Castejón, I.M. Llorente, R. Mayo. "More efficient executions of Monte Carlo codes by means of Montera: the ISDEP use case". IEEE Comp. Soc. Conf. Proc. 19th Euromicro Conference on Parallel, Distributed and Network-based Processing, 380-384 (2010).
M. Rodríguez-Pascual, J. Guasp, F. Castejón, A.J. Rubio-Montero, I.M. Llorente, R. Mayo. "Improvements on the fusion code FAFNER2". IEEE Transaction on Plasma Science 38, 2102-2110 (2010)
M.A. Rodríguez-Pascual, F. Castejón, A.J. Rubio-Montero, R. Mayo. "FAFNER2: A Comparison between the Grid and the MPI Versions of the Code". IEEE Proc. 2010 International Conference on High Performance Computing & Simulations, 78-84 (2010)
M.A. Rodríguez-Pascual, J. Guasp, F. Castejón, A.J. Rubio-Montero, I.M. Llorente, R. Mayo. "A Grid version of the Fusion code FAFNER". IEEE Comp. Soc. Conf. Proc. 18th Euromicro Conference on Parallel, Distributed and Network-based Processing, 449-453 (2010)
A.J. Rubio-Montero, F. Castejón, M.A. Rodríguez-Pascual, E. Montes, R. Mayo. "Drift Kinetic Equation solver for Grid (DKEsG)". IEEE Transaction on Plasma Science 38, 2093-2101 (2010)
A.J. Rubio-Montero, L.A. Flores, F. Castejón, E. Montes, M.A. Rodríguez-Pascual, R. Mayo. "Executions of a Fusion Drift Kinetic Equation solver on Grid". IEEE Comp. Soc. Conf. Proc. 18th Euromicro Conference on Parallel, Distributed and Network-based Processing, 454-459 (2010)
M. Rodríguez-Pascual, B.D. Scott, T.T. Ribeiro, F. Castejón, R. Mayo. "gGEM: a gyrofluid model to be used on distributed platforms". IEEE Transaction on Plasma Science 38, 2111-2118 (2010)
M.A. Rodríguez-Pascual, B.D. Scott, T.T. Ribeiro, F. Castejón, R. Mayo. "From Gem to gGEM". IEEE Comp. Soc. Conf. Proc. 18th Euromicro Conference on Parallel, Distributed and Network-based Processing, 503-507 (2010)
M.A. Rodríguez-Pascual, D. Pérez de Lara, E.M. González, A. Gómez, A.J. Rubio-Montero, R. Mayo, J.L. Vicent. "Grid computing simulation of superconducting vortex lattice in superconducting magnetic nanostructures". Iberian Grid Infrastructure Conf. Proc. 4, 97-108 (2010)
M. Loureiro, M. Pan, M. Rodríguez-Pascual, D. Posada, R. Mayo. "Grid selection of models of nucleotide substitution". Studies in Health Technology and Informatics 159, 244-248 (2010)
R. Isea, E. Montes, A.J. Rubio-Montero, J.D. Rosales, M. Rodríguez-Pascual, R. Mayo. "Characterization of antigenetic serotypes from the dengue virus in Venezuela by means of Grid Computing". Studies in Health Technology and Informatics 159, 234-238 (2010)

2009

M.A. Rodríguez-Pascual, J. Guasp, F. Castejón, I.M. Llorente, R. Mayo. "FAFNER2: Executions of a code for estimating NBI heating of fusion plasmas on Grid". Proc. Second EELA-2 Conf. 117-123 (2009) M. Rodríguez, J. Guasp, F.Castejón, A.J. Rubio-Montero, R. Mayo. "FAFNER2: adaptation of a code for estimating NBI heating of fusion plasmas on the Grid". Proc. First EELA-2 Conf. 227-234 (2009)
A.J. Rubio-Montero, L.A. Flores, E. Montes, F. Castejón, M.A. Rodríguez-Pascual, R. Mayo. "Executions of the DKES code on the EELA-2 infrastructure". Proc. Second EELA-2 Conf. 27-32 (2009)
A. .J. Rubio-Montero, E. Montes, F. Castejón, L. A. Flores, M. Rodríguez, R. Mayo. "Calculations of Neoclassical Transport on the Grid". Proc. First EELA-2 Conf. 213-218 (2009)
E. Montes, R. Isea, A.J. Rubio-Montero, R. Mayo. "A brief description of the web service implemented in the PhyloGrid application". Proc. Second EELA-2 Conf. 69-75 (2009)
R. Isea, J. L. Chaves, E. Montes, A. J. Rubio-Montero, R. Mayo. "The evolution of HPV by means of a phylogenetic study". Studies in Health Technology and Informatics 147, 245-250 (2009)
R. Isea, E. Montes, A. J. Rubio-Montero, R. Mayo. "Computational challenges on Grid Computing for workflows applied to Phylogeny". Lecture Notes in Computer Science 5518, 1130-1138 (2009)
R. Isea, E. Montes, A. J. Rubio-Montero, R. Mayo. "Challenges and characterization of a Biological system on Grid by means of the PhyloGrid application". Proc. First EELA-2 Conf. 139-146 (2009)
A.J. Rubio-Montero, P. Arce, J.I. Lagares, Yu.P. Ivanov, D.A. Burbano, G. Díaz, R. Mayo. "Performance tests of GAMOS software on EELA-2 infrastructure". Proc. Second EELA-2 Conf. 379-385 (2009)

2008

E. Montes, R. Isea, R. Mayo. "PhyloGrid: a development for a workflow in Phylogeny". Iberian Grid Infrastructure Conf. Proc. 2, 378-387 (2008)